gvar
Schema for describing genomic variants as organised in a VCF file.
This is not a representation of a VCF in RDF.
This is a representation of genomic variants as Linked Data.
URI: https://ican.fr/
Name: gvar
Classes
Slots
| Slot |
Description |
| begins_at |
The beginning of the location of the sequence alteration |
| ends_at |
The end of the location of the sequence alteration |
| has_alternate_allele |
Links the sequence alteration to its alternate allele |
| has_identifier |
A unique identifier for the sequence alteration |
| has_location |
Links the sequence alteration to its location |
| has_reference |
The reference sequence (contig, sequence, chromosome) |
| has_reference_allele |
Links the sequence alteration to its reference allele |
| has_zygosity |
The zygosity of the sequence alteration |
| hgvsid |
HGVSid |
| label |
A human-readable label for the reference sequence |
| other |
Other identifiers |
| position |
The position of the beginning of the location of the sequence alteration |
| rsid |
dbsnp rsid |
| sameAs |
The value of the reference sequence in another database (ncbi sequence i |
| value |
The value of the reference allele |
| variantcatalog |
|
Enumerations
| Enumeration |
Description |
| ZygosityType |
Enumeration of zygosity types |
Types
| Type |
Description |
| Boolean |
A binary (true or false) value |
| Curie |
a compact URI |
| Date |
a date (year, month and day) in an idealized calendar |
| DateOrDatetime |
Either a date or a datetime |
| Datetime |
The combination of a date and time |
| Decimal |
A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double |
A real number that conforms to the xsd:double specification |
| Float |
A real number that conforms to the xsd:float specification |
| Integer |
An integer |
| Jsonpath |
A string encoding a JSON Path |
| Jsonpointer |
A string encoding a JSON Pointer |
| Ncname |
Prefix part of CURIE |
| Nodeidentifier |
A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier |
A URI or CURIE that represents an object in the model |
| Sparqlpath |
A string encoding a SPARQL Property Path |
| String |
A character string |
| Time |
A time object represents a (local) time of day, independent of any particular... |
| Uri |
a complete URI |
| Uriorcurie |
a URI or a CURIE |
Subsets