Class: VariationSite

Represents the location of a sequence alteration.

 classDiagram
    class VariationSite
    click VariationSite href "../VariationSite"
      VariationSite : begins_at




    VariationSite --> "1" VariationSiteBegin : begins_at
    click VariationSiteBegin href "../VariationSiteBegin"


      VariationSite : ends_at




    VariationSite --> "1" VariationSiteEnd : ends_at
    click VariationSiteEnd href "../VariationSiteEnd"


      VariationSite : has_reference




    VariationSite --> "1" VariationSiteReference : has_reference
    click VariationSiteReference href "../VariationSiteReference"

Slots

Name	Cardinality and Range	Description	Inheritance
begins_at	1 VariationSiteBegin	The beginning of the location of the sequence alteration	direct
ends_at	1 VariationSiteEnd	The end of the location of the sequence alteration	direct
has_reference	1 VariationSiteReference	The reference sequence (contig, sequence, chromosome)	direct

Usages

used by	used in	type	used
SequenceAlteration	has_location	range	VariationSite

Identifier and Mapping Information

Schema Source

from schema: https://ican.fr/

Mappings

Mapping Type	Mapped Value
self	faldo:Region
native	ican:VariationSite

LinkML Source

Direct

name: VariationSite
description: Represents the location of a sequence alteration.
from_schema: https://ican.fr/
attributes:
  begins_at:
    name: begins_at
    description: The beginning of the location of the sequence alteration.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:begin
    domain_of:
    - VariationSite
    range: VariationSiteBegin
    required: true
  ends_at:
    name: ends_at
    description: The end of the location of the sequence alteration.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:end
    domain_of:
    - VariationSite
    range: VariationSiteEnd
    required: true
  has_reference:
    name: has_reference
    description: The reference sequence (contig, sequence, chromosome).
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:reference
    domain_of:
    - VariationSite
    range: VariationSiteReference
    required: true
class_uri: faldo:Region

Induced

name: VariationSite
description: Represents the location of a sequence alteration.
from_schema: https://ican.fr/
attributes:
  begins_at:
    name: begins_at
    description: The beginning of the location of the sequence alteration.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:begin
    alias: begins_at
    owner: VariationSite
    domain_of:
    - VariationSite
    range: VariationSiteBegin
    required: true
  ends_at:
    name: ends_at
    description: The end of the location of the sequence alteration.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:end
    alias: ends_at
    owner: VariationSite
    domain_of:
    - VariationSite
    range: VariationSiteEnd
    required: true
  has_reference:
    name: has_reference
    description: The reference sequence (contig, sequence, chromosome).
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: faldo:reference
    alias: has_reference
    owner: VariationSite
    domain_of:
    - VariationSite
    range: VariationSiteReference
    required: true
class_uri: faldo:Region