Class: VariationSiteReference

Represents the reference sequence (contig, sequence, chromosome).

 classDiagram
    class VariationSiteReference
    click VariationSiteReference href "../VariationSiteReference"
      VariationSiteReference : label

      VariationSiteReference : sameAs

      VariationSiteReference : value

Slots

Name	Cardinality and Range	Description	Inheritance
value	1 String	The value of the reference sequence (ena sequence i	direct
label	1 String	A human-readable label for the reference sequence	direct
sameAs	1 String	The value of the reference sequence in another database (ncbi sequence i	direct

Usages

used by	used in	type	used
VariationSite	has_reference	range	VariationSiteReference

Identifier and Mapping Information

Schema Source

from schema: https://ican.fr/

Mappings

Mapping Type	Mapped Value
self	so:0000353
native	ican:VariationSiteReference

LinkML Source

Direct

name: VariationSiteReference
description: Represents the reference sequence (contig, sequence, chromosome).
from_schema: https://ican.fr/
attributes:
  value:
    name: value
    description: The value of the reference sequence (ena sequence i.e. https://www.ebi.ac.uk/ena/browser/view/CM000684.2).
    from_schema: https://ican.fr/
    domain_of:
    - ReferenceAllele
    - AlternateAllele
    - VariationSiteReference
    range: string
    required: true
  label:
    name: label
    description: A human-readable label for the reference sequence.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: rdfs:label
    domain_of:
    - VariationSiteReference
    range: string
    required: true
  sameAs:
    name: sameAs
    description: The value of the reference sequence in another database (ncbi sequence
      i.e. https://www.ncbi.nlm.nih.gov/nuccore/NC_000022.11).
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: owl:sameAs
    domain_of:
    - VariationSiteReference
    range: string
    required: true
class_uri: so:0000353

Induced

name: VariationSiteReference
description: Represents the reference sequence (contig, sequence, chromosome).
from_schema: https://ican.fr/
attributes:
  value:
    name: value
    description: The value of the reference sequence (ena sequence i.e. https://www.ebi.ac.uk/ena/browser/view/CM000684.2).
    from_schema: https://ican.fr/
    alias: value
    owner: VariationSiteReference
    domain_of:
    - ReferenceAllele
    - AlternateAllele
    - VariationSiteReference
    range: string
    required: true
  label:
    name: label
    description: A human-readable label for the reference sequence.
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: VariationSiteReference
    domain_of:
    - VariationSiteReference
    range: string
    required: true
  sameAs:
    name: sameAs
    description: The value of the reference sequence in another database (ncbi sequence
      i.e. https://www.ncbi.nlm.nih.gov/nuccore/NC_000022.11).
    from_schema: https://ican.fr/
    rank: 1000
    slot_uri: owl:sameAs
    alias: sameAs
    owner: VariationSiteReference
    domain_of:
    - VariationSiteReference
    range: string
    required: true
class_uri: so:0000353